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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152789613_152790485_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
152789613 - 152790485
Intron Length:
873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACCGGCT
5'SS Class:
weak_major
3'SS Sequence:
TTCAACTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CTTGCTTCAACT
Flanking Amino Acid:
DALFLTAKATELFVQYLASY
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.7
0.18
1.3
53.2
43
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
73.4
0.53
0.8
70.4
35.9
Minor 5ss
36.8
-1.5
3.8
56.3
48
Minor BPS
63.7
0.51
1.7
79.65
42.8

Associated Gene:

Gene:
CHRAC1
Ensembl Gene ID:
ENSAPLG00000030772
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033350
152789472 - 152791914
2443