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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152804197_152804620_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
152804197 - 152804620
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TCCCTTTTACCC
Flanking Amino Acid:
RYHLVDKEHDSAEGSHTSGQ
Intron Amino Acid Position:
829

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
74.2
0.6
1
67
39.4
Major PPT
86.6
0.82
0.7
84.2
23.8
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
50.3
-0
1.6
58.25
41.5

Associated Gene:

Gene:
AGO2
Ensembl Gene ID:
ENSAPLG00000010465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010970
152804088 - 152847151
43064