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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152805739_152806964_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
152805739 - 152806964
Intron Length:
1226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACGTTCT
5'SS Class:
major
3'SS Sequence:
ACTGTTCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
TGCACCTTAATA
Flanking Amino Acid:
RLFCTDKNERVGKSGNIPAG
Intron Amino Acid Position:
729

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
72.5
39.7
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
68.3
0.41
1
62.4
38.2
Minor 5ss
41.3
-1
3
50.7
45.7
Minor BPS
71.8
0.68
1.3
72.91
39.1

Associated Gene:

Gene:
AGO2
Ensembl Gene ID:
ENSAPLG00000010465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010970
152804088 - 152847151
43064