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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152807100_152808145_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
152807100 - 152808145
Intron Length:
1046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTACATTT
5'SS Class:
major
3'SS Sequence:
GCTTCTGACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTTCATATTT
Flanking Amino Acid:
DGVSEGQFQQVLHHELLAIR
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.3
73.6
37.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
68
0.41
1
65.4
40.2
Minor 5ss
45.8
-0.4
2.9
66
44.9
Minor BPS
54.7
0.23
1.9
76
41.3

Associated Gene:

Gene:
AGO2
Ensembl Gene ID:
ENSAPLG00000010465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010970
152804088 - 152847151
43064