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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152809258_152811272_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
152809258 - 152811272
Intron Length:
2015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTCTCTTTACCA
Flanking Amino Acid:
GVNNILLPQGRPPVFQQPVI
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.6
37.2
Major BPS
78.6
0.71
1
78.6
31
Major PPT
82.8
0.74
0.8
77.5
35.5
Minor 5ss
32.4
-2
3.4
46.7
48.6
Minor BPS
70.4
0.64
1.6
78.6
38.6

Associated Gene:

Gene:
AGO2
Ensembl Gene ID:
ENSAPLG00000010465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010970
152804088 - 152847151
43064