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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152811433_152813402_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152811433 - 152813402
Intron Length:
1970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTCAGTAAG
5'SS Class:
major
3'SS Sequence:
CTTTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AAATATATAATT
Flanking Amino Acid:
VILPGKTPVYAEVKRVGDTV
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.3
70.6
41.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
88.9
0.88
0.7
84
31
Minor 5ss
30.6
-2.2
2.5
31.2
36.1
Minor BPS
49.4
0.04
1.7
66.72
37.5

Associated Gene:

Gene:
AGO2
Ensembl Gene ID:
ENSAPLG00000010465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010970
152804088 - 152847151
43064