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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152813588_152815833_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
152813588 - 152815833
Intron Length:
2246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TCCATCCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTTCTGAGAA
Flanking Amino Acid:
PQRQCTEVHLKSFTEQLRKI
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
72.5
37.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
75.1
0.56
0.8
69.4
31.1
Minor 5ss
34.7
-1.7
3.2
42
38.7
Minor BPS
56.4
0.2
1.8
73.5
37.9

Associated Gene:

Gene:
AGO2
Ensembl Gene ID:
ENSAPLG00000010465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010970
152804088 - 152847151
43064