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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152817880_152818247_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
152817880 - 152818247
Intron Length:
368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTAATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTCTTCAAGT
Flanking Amino Acid:
PDRQEEISKLMRSASFNTDP
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.9
0.79
0.8
82.3
32.9
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
67.9
0.64
1.8
87.98
37.6

Associated Gene:

Gene:
AGO2
Ensembl Gene ID:
ENSAPLG00000010465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010970
152804088 - 152847151
43064