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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152818703_152819685_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
152818703 - 152819685
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAAGTAT
5'SS Class:
major
3'SS Sequence:
TGATTTCCAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATGTTTGATT
Flanking Amino Acid:
NVTRRPASHQTFPLQQENGQ
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
69
38.3
Major BPS
100
1.24
0.5
100
0
Major PPT
67.5
0.39
0.9
63.5
38.1
Minor 5ss
39.1
-1.2
3.5
54
44.1
Minor BPS
54.9
0.24
1.8
70.75
41.2

Associated Gene:

Gene:
AGO2
Ensembl Gene ID:
ENSAPLG00000010465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010970
152804088 - 152847151
43064