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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152823107_152824470_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
152823107 - 152824470
Intron Length:
1364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
DVVMRHLPSMRYTPVGRSFF
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
90.4
0.91
0.7
89.1
26
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
AGO2
Ensembl Gene ID:
ENSAPLG00000010465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010970
152804088 - 152847151
43064