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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152824656_152829976_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
152824656 - 152829976
Intron Length:
5321

Sequence Information:

Terminal Dinucleotides:
GT-TG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGCATTGTTG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GAATCAT
U12 Branch Point Sequence:
TTGTTTGGCATT
Flanking Amino Acid:
AMPLPIGRDKQVELEVTLPG
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
62.7
0.32
1.3
66
40.9
Major PPT
41.6
-0.4
3.2
59.5
41.6
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
40.9
-0.6
2.3
63.17
42.3

Associated Gene:

Gene:
AGO2
Ensembl Gene ID:
ENSAPLG00000010465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010970
152804088 - 152847151
43064