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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152830098_152833207_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
152830098 - 152833207
Intron Length:
3110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
GTTGAATTAACG
Flanking Amino Acid:
KPEKCPRRVNREIVEHMVQH
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
73
36.9
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
85.3
0.79
0.9
76.9
42.1
Minor 5ss
32.4
-2
3.3
43.9
43.9
Minor BPS
51.5
-0
2
62.66
44.5

Associated Gene:

Gene:
AGO2
Ensembl Gene ID:
ENSAPLG00000010465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010970
152804088 - 152847151
43064