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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152833404_152847120_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152833404 - 152847120
Intron Length:
13717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGCTC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTTTCTAATT
Flanking Amino Acid:
MYPGATSAGPVLAPPPPMPP
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
64.2
41.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
93.7
0.98
0.6
88.2
29.1
Minor 5ss
30.4
-2.2
3.4
42.7
44.4
Minor BPS
69.2
0.68
1.6
87.82
31.2

Associated Gene:

Gene:
AGO2
Ensembl Gene ID:
ENSAPLG00000010465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010970
152804088 - 152847151
43064