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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152855575_152855698_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
152855575 - 152855698
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GGCCTCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAG
U12 Branch Point Sequence:
GTCTCCTCAGCG
Flanking Amino Acid:
ILHDDEVTVTEDKINALIKA
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
58.4
0.21
1.5
67.6
40.6
Major PPT
68.7
0.42
1
60.9
40.2
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
52.9
-0
1.9
60.65
46.7

Associated Gene:

Gene:
RPLP1
Ensembl Gene ID:
ENSAPLG00000023830
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017340
152855503 - 152856568
1066