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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152855774_152855876_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
152855774 - 152855876
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGTTAAC
U12 Branch Point Sequence:
CCCGCGTTAACG
Flanking Amino Acid:
EPFWPGLFAKALANIDIGSL
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
62.1
0.3
1.2
65
38.7
Major PPT
89
0.88
0.6
88.1
21.8
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
47.2
-0.3
2.3
50.03
49.9

Associated Gene:

Gene:
RPLP1
Ensembl Gene ID:
ENSAPLG00000023830
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017340
152855503 - 152856568
1066