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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152855995_152856432_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152855995 - 152856432
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TTTTCTTTTATA
Flanking Amino Acid:
AAPAGGGAAPAEEKKEEEKK
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
67.1
44.6
Major BPS
75.5
0.63
1
66
40.9
Major PPT
91.5
0.93
0.6
88
22
Minor 5ss
31.6
-2.1
3.1
31.9
42.5
Minor BPS
72.9
0.71
1.5
82.82
31.5

Associated Gene:

Gene:
RPLP1
Ensembl Gene ID:
ENSAPLG00000023830
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017340
152855503 - 152856568
1066