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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152859728_152859861_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
152859728 - 152859861
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
GTTTCCTTATTT
Flanking Amino Acid:
PPEEYVPMVKEVGLALRTLL
Intron Amino Acid Position:
974

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
86
0.81
0.6
84.8
22.9
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
75.7
0.88
1.5
88.81
36.2

Associated Gene:

Gene:
PTK2
Ensembl Gene ID:
ENSAPLG00000011901
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012552
152858812 - 152994152
135341
ENSAPLT00000035443
152858263 - 153035137
176875
ENSAPLT00000033488
152858812 - 153009310
150499
ENSAPLT00000024030
152858263 - 153035137
176875
ENSAPLT00000047904
152858263 - 153035137
176875
ENSAPLT00000021673
152858263 - 152992228
133966
ENSAPLT00000044829
152858263 - 153035137
176875