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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152876418_152879261_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
152876418 - 152879261
Intron Length:
2844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTAAG
5'SS Class:
major
3'SS Sequence:
TTTATACTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCCTTTATA
Flanking Amino Acid:
SGGSDEAPPKPSRPGYPSPR
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.2
68.8
43.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.1
0.77
0.8
77.5
35.8
Minor 5ss
39.2
-1.2
3
50.1
46.4
Minor BPS
78.8
0.9
1.5
87.38
30.3

Associated Gene:

Gene:
PTK2
Ensembl Gene ID:
ENSAPLG00000011901
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024030
152858263 - 153035137
176875
ENSAPLT00000047904
152858263 - 153035137
176875
ENSAPLT00000021673
152858263 - 152992228
133966
ENSAPLT00000044829
152858263 - 153035137
176875
ENSAPLT00000012552
152858812 - 152994152
135341
ENSAPLT00000035443
152858263 - 153035137
176875
ENSAPLT00000033488
152858812 - 153009310
150499