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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152890931_152893711_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152890931 - 152893711
Intron Length:
2781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTTCTCCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AAAAAAAAAACT
Flanking Amino Acid:
SVREKFLQEALTMRQFDHPN
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
80.3
34.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
86.8
0.83
0.6
85.6
21.5
Minor 5ss
39.1
-1.2
3.1
61.3
43
Minor BPS
37.8
-0.8
2
53.29
40.4

Associated Gene:

Gene:
PTK2
Ensembl Gene ID:
ENSAPLG00000011901
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012552
152858812 - 152994152
135341
ENSAPLT00000035443
152858263 - 153035137
176875
ENSAPLT00000033488
152858812 - 153009310
150499
ENSAPLT00000024030
152858263 - 153035137
176875
ENSAPLT00000047904
152858263 - 153035137
176875
ENSAPLT00000021673
152858263 - 152992228
133966
ENSAPLT00000044829
152858263 - 153035137
176875