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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152897147_152898201_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152897147 - 152898201
Intron Length:
1055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGGA
5'SS Class:
major
3'SS Sequence:
TATATTCTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
GATGTTTTAAGT
Flanking Amino Acid:
MPSKSYGIDEARDYEIQRER
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.2
66.1
40.1
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
79.4
0.66
0.8
74.3
36
Minor 5ss
35.3
-1.7
3.4
47.8
47.6
Minor BPS
54.1
0.21
1.7
68.82
42.5

Associated Gene:

Gene:
PTK2
Ensembl Gene ID:
ENSAPLG00000011901
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021673
152858263 - 152992228
133966
ENSAPLT00000047904
152858263 - 153035137
176875
ENSAPLT00000044829
152858263 - 153035137
176875
ENSAPLT00000033488
152858812 - 153009310
150499