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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152898223_152899534_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152898223 - 152899534
Intron Length:
1312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
AATTGCACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTCTCTTAATT
Flanking Amino Acid:
DEEDTYTMPSKSYGIDEARD
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
68.8
0.42
1
60.3
40.5
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
82.6
1.1
1
93.07
28.2

Associated Gene:

Gene:
PTK2
Ensembl Gene ID:
ENSAPLG00000011901
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021673
152858263 - 152992228
133966
ENSAPLT00000047904
152858263 - 153035137
176875
ENSAPLT00000044829
152858263 - 153035137
176875
ENSAPLT00000033488
152858812 - 153009310
150499