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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152899592_152904417_R

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
152899592 - 152904417
Intron Length:
4826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACTGCAC
5'SS Class:
weak_major
3'SS Sequence:
CCTCCCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AATTCTTCAATT
Flanking Amino Acid:
VFCSHEPPPKETDDYAEIID
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.7
0.21
1.2
47.9
42.6
Major BPS
100
1.24
0.5
100
0
Major PPT
81.8
0.72
0.7
75.2
26.9
Minor 5ss
29.6
-2.3
3.4
32.8
42.4
Minor BPS
67.6
0.63
1.4
79.93
36

Associated Gene:

Gene:
PTK2
Ensembl Gene ID:
ENSAPLG00000011901
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044829
152858263 - 153035137
176875