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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152904502_152912264_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152904502 - 152912264
Intron Length:
7763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTGTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
CTCTTTGTAAAG
Flanking Amino Acid:
GVRSHTVSVSGVNHCQHKVK
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
68.1
0.41
1.1
69.5
34.6
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
45.4
-0.4
2.1
50.95
44.1

Associated Gene:

Gene:
PTK2
Ensembl Gene ID:
ENSAPLG00000011901
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021673
152858263 - 152992228
133966
ENSAPLT00000047904
152858263 - 153035137
176875
ENSAPLT00000044829
152858263 - 153035137
176875
ENSAPLT00000024030
152858263 - 153035137
176875