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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152924924_152925644_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
152924924 - 152925644
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTCGATTCTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAC
U12 Branch Point Sequence:
TCTCCTTCGATT
Flanking Amino Acid:
DKECFKCALGSSWIISVELA
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
71
40.9
Major BPS
63.6
0.34
1
71
30.6
Major PPT
67.7
0.4
1.1
67.8
37.7
Minor 5ss
37.1
-1.5
2.8
43.2
43.8
Minor BPS
55.7
0.26
1.5
72.38
39.2

Associated Gene:

Gene:
PTK2
Ensembl Gene ID:
ENSAPLG00000011901
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024030
152858263 - 153035137
176875
ENSAPLT00000047904
152858263 - 153035137
176875
ENSAPLT00000021673
152858263 - 152992228
133966
ENSAPLT00000044829
152858263 - 153035137
176875
ENSAPLT00000012552
152858812 - 152994152
135341
ENSAPLT00000035443
152858263 - 153035137
176875
ENSAPLT00000033488
152858812 - 153009310
150499