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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152951344_152957907_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
152951344 - 152957907
Intron Length:
6564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGCCA
5'SS Class:
major
3'SS Sequence:
CTTGCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
ACCAGTTTAATT
Flanking Amino Acid:
FEQAHPPEEWKYELRIRYLP
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
66
39.6
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
86.5
0.82
0.8
84.1
30.8
Minor 5ss
32.7
-2
3.3
40.2
39.6
Minor BPS
49.3
0.03
1.8
62.04
42.9

Associated Gene:

Gene:
PTK2
Ensembl Gene ID:
ENSAPLG00000011901
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012552
152858812 - 152994152
135341
ENSAPLT00000035443
152858263 - 153035137
176875
ENSAPLT00000033488
152858812 - 153009310
150499
ENSAPLT00000024030
152858263 - 153035137
176875
ENSAPLT00000047904
152858263 - 153035137
176875
ENSAPLT00000021673
152858263 - 152992228
133966
ENSAPLT00000044829
152858263 - 153035137
176875