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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152968507_152992182_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152968507 - 152992182
Intron Length:
23676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGACTCA
5'SS Class:
major
3'SS Sequence:
TTTCCTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATAACCAAAATT
Flanking Amino Acid:
CSPFPMCWAKEYDRYLASSK
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
61.9
39.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.8
0.74
0.7
76.9
31.7
Minor 5ss
42.1
-0.9
3.2
56.5
47.9
Minor BPS
48.7
-0
1.9
69.25
41.4

Associated Gene:

Gene:
PTK2
Ensembl Gene ID:
ENSAPLG00000011901
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021673
152858263 - 152992228
133966