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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_152968507_152994130_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152968507 - 152994130
Intron Length:
25624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATAACCAAAATT
Flanking Amino Acid:
MYFFSVEEYDRYLASSK
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.6
35.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.8
0.74
0.7
76.9
31.7
Minor 5ss
35.4
-1.7
2.8
45.8
42.3
Minor BPS
48.7
-0
1.9
69.25
41.4

Associated Gene:

Gene:
PTK2
Ensembl Gene ID:
ENSAPLG00000011901
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012552
152858812 - 152994152
135341