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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_153065365_153066050_R

Intron Information:

Intron Rank:
137965
Intron Class:
major
Intron Phase:
Intron Coordinates:
153065365 - 153066050
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGGTTT
5'SS Class:
major
3'SS Sequence:
TTCTGCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTCCCTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
71.6
40.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.1
0.68
0.8
73.7
31.3
Minor 5ss
37.6
-1.4
3.6
55.8
48.5
Minor BPS
53.9
0.2
2.1
77.92
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021737
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037630
153064374 - 153066849
2476