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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_153071044_153071146_R

Intron Information:

Intron Rank:
141727
Intron Class:
major
Intron Phase:
Intron Coordinates:
153071044 - 153071146
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTATA
5'SS Class:
major
3'SS Sequence:
TTTATTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTGATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.3
79.7
35.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92.5
0.96
0.7
88.4
28.6
Minor 5ss
40.8
-1
2.6
51.4
45.1
Minor BPS
48.9
0
1.8
67.9
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023611
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043873
153070875 - 153073416
2542