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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_153071246_153072791_R

Intron Information:

Intron Rank:
141726
Intron Class:
major
Intron Phase:
Intron Coordinates:
153071246 - 153072791
Intron Length:
1546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGCTTT
5'SS Class:
major
3'SS Sequence:
TCCTTCATGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACCTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
75
37.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
73.8
0.54
1
73.5
35.7
Minor 5ss
43.3
-0.7
3.3
64.2
47.3
Minor BPS
73.7
0.82
1.5
89.39
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023611
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032859
153070875 - 153072816
1942