About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_153089623_153093546_R

Intron Information:

Intron Rank:
151330
Intron Class:
major
Intron Phase:
Intron Coordinates:
153089623 - 153093546
Intron Length:
3924

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GCTCGCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
GCTCGCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
71.4
0.48
0.9
63.9
36.8
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
48.2
-0.1
2.2
61.26
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028952
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021970
153088545 - 153093651
5107