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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1531080_1531968_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1531080 - 1531968
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGATT
5'SS Class:
strong_major
3'SS Sequence:
AAATCTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAACAAA
U12 Branch Point Sequence:
ATGCACGTAACA
Flanking Amino Acid:
DSEVTADTKTEEKETEENKE
Intron Amino Acid Position:
869

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
84.4
33
Major BPS
49.3
-0
1.3
57.4
35.7
Major PPT
74.9
0.56
0.9
70.7
39.9
Minor 5ss
38.3
-1.3
3.4
57.5
46.8
Minor BPS
48.7
-0.1
2.2
64.41
41.6

Associated Gene:

Gene:
SMARCC1
Ensembl Gene ID:
ENSAPLG00000014937
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025065
1510299 - 1709755
199457
ENSAPLT00000038362
1510299 - 1709755
199457
ENSAPLT00000017626
1510299 - 1709755
199457
ENSAPLT00000038184
1510299 - 1709755
199457
ENSAPLT00000017188
1510299 - 1709755
199457
ENSAPLT00000035479
1510299 - 1709755
199457
ENSAPLT00000046273
1510299 - 1709755
199457
ENSAPLT00000015679
1510299 - 1709755
199457
ENSAPLT00000030423
1510299 - 1709755
199457
ENSAPLT00000045670
1510299 - 1709755
199457