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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_153118364_153122714_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
153118364 - 153122714
Intron Length:
4351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTGTTTTTTATA
Flanking Amino Acid:
PKEQLRAVLQDTQRRTKNLP
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
87.7
0.85
0.7
84.2
30.9
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
59.5
0.29
1.6
69.78
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027705
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025633
153118280 - 153124538
6259