About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_153122992_153123752_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
153122992 - 153123752
Intron Length:
761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAG
5'SS Class:
major
3'SS Sequence:
GTCTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TAGTCTTTAAAA
Flanking Amino Acid:
LIGLPQLCFPGGLYVTSESK
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
59.6
41.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
80
0.68
0.9
73.8
35.4
Minor 5ss
35.1
-1.7
3.4
46.5
48.8
Minor BPS
70.8
0.65
1.3
73.8
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027705
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025633
153118280 - 153124538
6259