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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_153123869_153124349_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
153123869 - 153124349
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTAT
5'SS Class:
major
3'SS Sequence:
CATTAATCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TTAACATAAACA
Flanking Amino Acid:
VVAQYYQPMQFPCRVAVFPQ
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
79.5
29.5
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
70
0.45
0.9
63.3
37.8
Minor 5ss
49.7
-0
2.5
66.5
39
Minor BPS
54.2
0.13
2
70.59
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027705
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025633
153118280 - 153124538
6259