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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_153159231_153159967_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
153159231 - 153159967
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTACTTTGA
5'SS Class:
weak_major
3'SS Sequence:
CGGGAATTCCAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATTCAC
U12 Branch Point Sequence:
AGTACATTCACC
Flanking Amino Acid:
QYHDIKEVRGRGFGIDCAIL
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.7
0.14
1.2
52.6
41.3
Major BPS
69.9
0.5
1
73
31.5
Major PPT
48.6
-0
1.1
41.2
42.1
Minor 5ss
39.8
-1.1
3
45
44.2
Minor BPS
49.1
-0
2.1
63.99
40.8

Associated Gene:

Gene:
SLC45A4
Ensembl Gene ID:
ENSAPLG00000014236
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014847
153158898 - 153183614
24717