About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_153163429_153165380_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
153163429 - 153165380
Intron Length:
1952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCAGAT
U12 Branch Point Sequence:
CGTGCTCAGATT
Flanking Amino Acid:
VALFLNGSVIGLAIGDVPDK
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.4
1.12
0.6
90.5
20.4
Major BPS
61.8
0.29
1.1
58.3
39.2
Major PPT
80.1
0.68
0.8
77.7
31
Minor 5ss
36
-1.6
2.7
44.9
43.2
Minor BPS
41.3
-0.6
1.9
55.42
41.6

Associated Gene:

Gene:
SLC45A4
Ensembl Gene ID:
ENSAPLG00000014236
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014847
153158898 - 153183614
24717