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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_153165570_153180721_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
153165570 - 153180721
Intron Length:
15152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
TCCCATGTAACC
Flanking Amino Acid:
ALVTPVLLQIGLPEQYYSLT
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
78.2
37.9
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
80.8
0.69
0.9
72.5
42.4
Minor 5ss
35.2
-1.7
3.2
51.1
45.2
Minor BPS
45.5
-0.3
2.1
56.02
42.7

Associated Gene:

Gene:
SLC45A4
Ensembl Gene ID:
ENSAPLG00000014236
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014847
153158898 - 153183614
24717