Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1532084 - 1533986

Intron Length:

1903

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCTTA

5'SS Class:

strong_major

3'SS Sequence:

TCATCCCATTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAT

U12 Branch Point Sequence:

CAATCCTTCATC

Flanking Amino Acid:

TETDGQQSEKVENKVESEIE

Intron Amino Acid Position:

831

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.5

0.98

0.8

84.1

30.2

Major BPS

82.6

0.81

0.9

83.3

27.7

Major PPT

69.3

0.44

0.9

67.2

34.1

Minor 5ss

47.4

-0.3

2.8

64.4

Minor BPS

58.4

0.25

1.8

64.14

41.7

Associated Gene:

Gene:

SMARCC1

Ensembl Gene ID:

ENSAPLG00000014937

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025065

1510299 - 1709755

199457

ENSAPLT00000038362

1510299 - 1709755

199457

ENSAPLT00000017626

1510299 - 1709755

199457

ENSAPLT00000038184

1510299 - 1709755

199457

ENSAPLT00000017188

1510299 - 1709755

199457

ENSAPLT00000035479

1510299 - 1709755

199457

ENSAPLT00000046273

1510299 - 1709755

199457

ENSAPLT00000015679

1510299 - 1709755

199457

ENSAPLT00000030423

1510299 - 1709755

199457

ENSAPLT00000045670

1510299 - 1709755

199457

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1532084_1533986_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: