Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_153264625_153272651_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

153264625 - 153272651

Intron Length:

8027

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTCAG

5'SS Class:

strong_major

3'SS Sequence:

GTTCTTACTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

GTGTTCTTACTG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.6

1.03

0.8

77.9

38.6

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

80.3

0.68

0.9

74.4

35.1

Minor 5ss

33.6

-1.9

2.9

40.4

45.7

Minor BPS

55.9

0.05

1.7

59.09

43.4

Associated Gene:

Gene:

GPR20

Ensembl Gene ID:

ENSAPLG00000023130

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028781

153261036 - 153284084

23049