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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15339148_15344566_R

Intron Information:

Intron Rank:
132037
Intron Class:
major
Intron Phase:
Intron Coordinates:
15339148 - 15344566
Intron Length:
5419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCAAATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTCCTCTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
64.7
0.33
0.9
56.3
38
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
75.7
0.89
1.1
84.73
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018276
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027772
15332858 - 15350523
17666