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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15339148_15344884_R

Intron Information:

Intron Rank:
132041
Intron Class:
major
Intron Phase:
Intron Coordinates:
15339148 - 15344884
Intron Length:
5737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCAAATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTCCTCTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
64.7
0.33
0.9
56.3
38
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
75.7
0.89
1.1
84.73
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018276
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038911
15332858 - 15360544
27687
ENSAPLT00000034411
15335704 - 15360544
24841
ENSAPLT00000047057
15335704 - 15350523
14820