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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_153415771_153417207_R

Intron Information:

Intron Rank:
138560
Intron Class:
major
Intron Phase:
Intron Coordinates:
153415771 - 153417207
Intron Length:
1437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATGAT
U12 Branch Point Sequence:
TTTGCTATGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
75
35.3
Major BPS
72.3
0.55
1.1
63.4
42.8
Major PPT
89.5
0.89
0.6
89
20.1
Minor 5ss
31.6
-2.1
3.3
41.1
45.4
Minor BPS
57.8
0.32
1.7
79.45
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022030
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038321
153415071 - 153417351
2281