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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15344645_15344884_R

Intron Information:

Intron Rank:
132038
Intron Class:
major
Intron Phase:
Intron Coordinates:
15344645 - 15344884
Intron Length:
240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTTTCAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
91.1
0.93
0.7
89.2
26.8
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
61.5
0.44
1.7
83.64
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018276
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027772
15332858 - 15350523
17666