Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15344984_15350362_R

Intron Information:

Intron Rank:

132039

Intron Class:

major

Intron Phase:

Intron Coordinates:

15344984 - 15350362

Intron Length:

5379

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTTCA

5'SS Class:

strong_major

3'SS Sequence:

ATTTTTGAGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

ATATCGCTAACG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

73.7

33.1

Major BPS

100

1.24

0.5

100

Major PPT

69.1

0.43

1.1

66.5

43.7

Minor 5ss

33.6

-1.9

41.1

45.4

Minor BPS

49.1

-0.2

2.4

63.7

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047057

15335704 - 15350523

14820

ENSAPLT00000038911

15332858 - 15360544

27687

ENSAPLT00000027772

15332858 - 15350523

17666