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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15344984_15360480_R

Intron Information:

Intron Rank:
132042
Intron Class:
major
Intron Phase:
Intron Coordinates:
15344984 - 15360480
Intron Length:
15497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGAGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATATCGCTAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.9
25.6
Major BPS
100
1.24
0.5
100
0
Major PPT
69.1
0.43
1.1
66.5
43.7
Minor 5ss
37
-1.5
2.6
46.5
41.8
Minor BPS
49.1
-0.2
2.4
63.7
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018276
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034411
15335704 - 15360544
24841