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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_153506253_153506899_F

Intron Information:

Intron Rank:
142424
Intron Class:
major
Intron Phase:
Intron Coordinates:
153506253 - 153506899
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCATATTTA
5'SS Class:
major
3'SS Sequence:
TTTATATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ATTACTTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
70
36.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
87.9
0.85
0.8
85.5
33.8
Minor 5ss
38.9
-1.2
4
57.6
47.1
Minor BPS
57.7
0.32
1.7
76.52
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026721
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035659
153505690 - 153507498
1809