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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_153511695_153513222_F

Intron Information:

Intron Rank:
146977
Intron Class:
major
Intron Phase:
Intron Coordinates:
153511695 - 153513222
Intron Length:
1528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAG
U12 Branch Point Sequence:
TTGTCAGAAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.4
39.1
Major BPS
60.9
0.27
1.7
71.4
45.1
Major PPT
89.3
0.88
0.6
88.8
20.5
Minor 5ss
42.2
-0.9
3.1
55.7
48.5
Minor BPS
42.6
-0.5
2.5
60.53
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029157
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029519
153486932 - 153519204
32273