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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_153513353_153518762_F

Intron Information:

Intron Rank:
146978
Intron Class:
major
Intron Phase:
Intron Coordinates:
153513353 - 153518762
Intron Length:
5410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAA
U12 Branch Point Sequence:
TTTTTCTCCTCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
60.3
0.26
1.2
51.7
43.9
Major PPT
81
0.7
0.7
73.9
31.2
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
42.2
-0.5
3.6
79.56
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029157
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029519
153486932 - 153519204
32273