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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_153513353_153559916_F

Intron Information:

Intron Rank:
146981
Intron Class:
major
Intron Phase:
Intron Coordinates:
153513353 - 153559916
Intron Length:
46564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
TGAAAGTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
82.2
0.72
0.7
77.5
24.4
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
45.5
-0.2
2.3
65.3
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029157
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048122
153512737 - 153560609
47873